PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG251700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 380aa    MW: 39782.6 Da    PI: 8.0561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG251700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.61.1e-8623702374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          + lL+ecA avs g+l+ a+ +L +l ++asp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p  ++      + aa+++f++vsP+
  Pavir.7KG251700.1.p   2 IALLMECAVAVSVGNLADANGMLLELGQMASPYAsSCGERLVAYFTKAMAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSPL 85 
                          689*******************************66779**********************888776665......678899******** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +f++l++N+aIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp lR+Tg+g     s+ +l+ tg++La +A++l +pfef
  Pavir.7KG251700.1.p  86 ARFAYLACNKAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPLLRVTGFGV----SASALHDTGNQLAGLASKLSIPFEF 171
                          *****************************988447**************************....9************************ PP

                 GRAS 179 nvlvakrledleleeL..rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..........adhnsesFle 255
                           + vakr  d++  +   +  + gEalaV++    h ++d  +       ++++lv+ l+Pkv+++veqe          a h+++ Fl+
  Pavir.7KG251700.1.p 172 YA-VAKRPGDVDAAAAvpSR-RpGEALAVHWLR--HAMYDAAGGDG----ATMRLVRWLEPKVLTLVEQErggapgdgggAGHDHGHFLD 253
                          **.68888888766652334.36********99..77775555555....5*******************8888877777778888**** PP

                 GRAS 256 rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                          rf++al++ysalfdsl a+ p+++   r+ vE+ +lgrei nv+a  g +r  r + l+ W++ l + GF  +    +    a+l+   +
  Pavir.7KG251700.1.p 254 RFVSALHHYSALFDSLGASRPADEdASRHLVEHGVLGREIGNVLAVGGPSRSGRDK-LGCWQAELARHGFLRAGGAGR----AQLVAGAC 338
                          ****************88888877699***********************999987.*************87776655....66777788 PP

                 GRAS 345 k.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                          + + gy+v ++++  v lgWk+ pL++vS W+
  Pavir.7KG251700.1.p 339 PpGLGYTVADDHDGTVrLGWKGTPLYAVSTWT 370
                          88899****88666666**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.9261352IPR005202Transcription factor GRAS
PfamPF035143.9E-842370IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MIALLMECAV AVSVGNLADA NGMLLELGQM ASPYASSCGE RLVAYFTKAM AARLMSSWVG  60
ICAPLAPPCA AVHAAFRAFY NVSPLARFAY LACNKAILEA FHGKRLVHIV DLDVVPGGAL  120
QWLSLLPALA ARPGGPPLLR VTGFGVSASA LHDTGNQLAG LASKLSIPFE FYAVAKRPGD  180
VDAAAAVPSR RPGEALAVHW LRHAMYDAAG GDGATMRLVR WLEPKVLTLV EQERGGAPGD  240
GGGAGHDHGH FLDRFVSALH HYSALFDSLG ASRPADEDAS RHLVEHGVLG REIGNVLAVG  300
GPSRSGRDKL GCWQAELARH GFLRAGGAGR AQLVAGACPP GLGYTVADDH DGTVRLGWKG  360
TPLYAVSTWT WCPSPHAQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-273936940374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269620.0KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963689.10.0PREDICTED: protein SCARECROW-like
TrEMBLK3Z5S20.0K3Z5S2_SETIT; Uncharacterized protein
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-87GRAS family protein